Browse dbCAN-PUL Entries

PULID
Characterization Method(s)
Substrate
Organism
Publication
Publish Date
Type
Num Genes
Num CAZymes
CazyFamily
PUL0029 enzyme activity assay arabinogalactan Bifidobacterium longum 30564851, 30635377
Degradative enzymes for type II arabinogalactan side chains in Bifidobacterium longum subsp. longum. Two Novel alpha-l-Arabinofuranosidases from Bifidobacterium longum subsp. longum Belonging to Glycoside Hydrolase Family 43 Cooperatively Degrade Arabinan. Appl Microbiol Biotechnol. 2019 Feb;103(3):1299-1310. doi: 10.1007/s00253-018-9566-4. Epub 2018 Dec 18. Appl Environ Microbiol. 2019 Mar 6;85(6):e02582-18. doi: 10.1128/AEM.02582-18. Print 2019 Mar 15.
2019 Feb,2019 Mar 15 degradation 24 8 GH146, GH30_5, GH43_22, GH43_22, GH43_26, GH43_22, GH43_34, GH43_24, GH43_27
PUL0535 RNA-seq arabinogalactan Bacteroides cellulosilyticus 23976882
Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome. PLoS Biol. 2013;11(8):e1001637. doi: 10.1371/journal.pbio.1001637. Epub 2013 Aug 20.
2013 degradation 9 3 CBM32, GH16_3, GH43_24, GH16_3
PUL0546 RNA-seq arabinogalactan Bacteroides cellulosilyticus 23976882
Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome. PLoS Biol. 2013;11(8):e1001637. doi: 10.1371/journal.pbio.1001637. Epub 2013 Aug 20.
2013 degradation 9 5 CBM13, CBM32, GH2, GH30_4, GH51_2
PUL0560 microarray, qPCR arabinogalactan Bacteroides thetaiotaomicron 18996345, 22205877
Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts. Cell Host Microbe. 2008 Nov 13;4(5):447-57. doi: 10.1016/j.chom.2008.09.007. PLoS Biol. 2011 Dec;9(12):e1001221. doi: 10.1371/journal.pbio.1001221. Epub 2011 Dec 20.
2008 Nov 13,2011 Dec degradation 30 4 GH35, GH43_24, PL27
PUL0563 microarray, qPCR arabinogalactan Bacteroides thetaiotaomicron 18996345, 22205877
Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts. Cell Host Microbe. 2008 Nov 13;4(5):447-57. doi: 10.1016/j.chom.2008.09.007. PLoS Biol. 2011 Dec;9(12):e1001221. doi: 10.1371/journal.pbio.1001221. Epub 2011 Dec 20.
2008 Nov 13,2011 Dec degradation 15 7 GH105, GH127, GH154, GH16_3, GH43_24, GH43_24, GH43_34, PL42
PUL0650 enzyme activity assay, high-performance anion-exchange chromatography, recombinant protein expression, NMR, gene deletion mutant and growth assay arabinogalactan Bifidobacterium longum JCM 7052 33674431
Novel 3-O-alpha-d-Galactosyl-alpha-l-Arabinofuranosidase for the Assimilation of Gum Arabic Arabinogalactan Protein in Bifidobacterium longum subsp. longum. Appl Environ Microbiol. 2021 Apr 27;87(10):e02690-20. doi: 10.1128/AEM.02690-20. Print 2021 Apr 27.
2021 Apr 27 degradation 7 2 GH36, GH39, CBM35
PUL0663 thin-layer chromatography, clone and expression, recombinant protein expression arabinogalactan Bacteroides plebeius DSM17135 34340552
Sulfation of Arabinogalactan Proteins Confers Privileged Nutrient Status to Bacteroides plebeius. mBio. 2021 Aug 31;12(4):e0136821. doi: 10.1128/mBio.01368-21. Epub 2021 Aug 3.
2021 Aug 31 degradation 7 4 GH154, GH43_17, GH43_24, PL42
PUL0664 thin-layer chromatography, clone and expression, recombinant protein expression arabinogalactan Bacteroides plebeius DSM17135 34340552
Sulfation of Arabinogalactan Proteins Confers Privileged Nutrient Status to Bacteroides plebeius. mBio. 2021 Aug 31;12(4):e0136821. doi: 10.1128/mBio.01368-21. Epub 2021 Aug 3.
2021 Aug 31 degradation 16 8 GH2, GH27, GH36, GH43, GH49
PUL0737 mass spectrometry, SDS-PAGE, growth assay arabinogalactan Maribacter sp. MAR_2009_72 38569650
Proteomic insight into arabinogalactan utilization by particle-associated Maribacter sp. MAR_2009_72. FEMS Microbiol Ecol. 2024 Apr 10;100(5):fiae045. doi: 10.1093/femsec/fiae045.
2024 Apr 10 degradation 16 4 CE20, CE20, GH10, GH43_1, GH67
PUL0738 mass spectrometry, SDS-PAGE, growth assay arabinogalactan Maribacter sp. MAR_2009_72 38569650
Proteomic insight into arabinogalactan utilization by particle-associated Maribacter sp. MAR_2009_72. FEMS Microbiol Ecol. 2024 Apr 10;100(5):fiae045. doi: 10.1093/femsec/fiae045.
2024 Apr 10 degradation 50 14 CBM67, GH78, CE12, CE12, CE12, GH105, GH106, GH115, GH179, GH2, GH28, GH29, GH31_9, GH33, GH43_18
PUL0739 mass spectrometry, SDS-PAGE, growth assay arabinogalactan Maribacter sp. MAR_2009_72 38569650
Proteomic insight into arabinogalactan utilization by particle-associated Maribacter sp. MAR_2009_72. FEMS Microbiol Ecol. 2024 Apr 10;100(5):fiae045. doi: 10.1093/femsec/fiae045.
2024 Apr 10 degradation 56 12 CE12, GH105, GH140, GH177, GH179, GH28, GH43_10, CBM91, GH43_19, GH43_34, GH51_1, PL10_1, CE8, PL1_2
Showing 1 to 11 of 11 entries
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