PULID | Characterization Method(s) | Substrate | Organism | Publication | Publish Date | Type | Num Genes | Num CAZymes | CazyFamily |
|---|---|---|---|---|---|---|---|---|---|
| PUL0029 | enzyme activity assay | arabinogalactan | Bifidobacterium longum | 30564851, 30635377 Degradative enzymes for type II arabinogalactan side chains in Bifidobacterium longum subsp. longum. Two Novel alpha-l-Arabinofuranosidases from Bifidobacterium longum subsp. longum Belonging to Glycoside Hydrolase Family 43 Cooperatively Degrade Arabinan. Appl Microbiol Biotechnol. 2019 Feb;103(3):1299-1310. doi: 10.1007/s00253-018-9566-4. Epub 2018 Dec 18. Appl Environ Microbiol. 2019 Mar 6;85(6):e02582-18. doi: 10.1128/AEM.02582-18. Print 2019 Mar 15. |
2019 Feb,2019 Mar 15 | degradation | 24 | 8 | GH146, GH30_5, GH43_22, GH43_22, GH43_26, GH43_22, GH43_34, GH43_24, GH43_27 |
| PUL0295 | gene trait matching exercise | arabinan | Bifidobacterium longum | 29310579 Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains. BMC Genomics. 2018 Jan 8;19(1):33. doi: 10.1186/s12864-017-4388-9. |
2018 Jan 8 | degradation | 9 | 5 | GH43_22, GH43_22, GH43_26, GH43_22, GH43_34, GH43_27 |
| PUL0300 | gene trait matching exercise | arabinoxylan | Bifidobacterium longum | 29310579 Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains. BMC Genomics. 2018 Jan 8;19(1):33. doi: 10.1186/s12864-017-4388-9. |
2018 Jan 8 | degradation | 14 | 5 | GH43_26, GH43_27, GH43_4, GH51_2 |
| PUL0735 | enzyme activity assay, clone and expression, reducing-sugar assay, thin-layer chromatography, SDS-PAGE | arabinan | Bifidobacterium longum subsp. suis DSM 20211 | 38542148 Functional Characterization of Endo- and Exo-Hydrolase Genes in Arabinan Degradation Gene Cluster of Bifidobacterium longum subsp. suis. Int J Mol Sci. 2024 Mar 9;25(6):3175. doi: 10.3390/ijms25063175. |
2024 Mar 9 | degradation | 17 | 7 | GH127, GH27, GH43_26, GH43_27, GH43_4, GH51_2 |
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