PULID | Characterization Method(s) | Substrate | Organism | Publication | Publish Date | Type | Num Genes | Num CAZymes | CazyFamily |
|---|---|---|---|---|---|---|---|---|---|
| PUL0034 | enzyme activity assay | pectin | Dickeya chrysanthemi | 12730169 PaeX, a second pectin acetylesterase of Erwinia chrysanthemi 3937. J Bacteriol. 2003 May;185(10):3091-100. doi: 10.1128/JB.185.10.3091-3100.2003. |
2003 May | degradation | 2 | 0 | NA |
| PUL0410 | RT-qPCR | host glycan | Escherichia coli | 21545489 Growth temperature regulation of some genes that define the superficial capsular carbohydrate composition of Escherichia coli K92. FEMS Microbiol Lett. 2011 Jul;320(2):135-41. doi: 10.1111/j.1574-6968.2011.02300.x. Epub 2011 May 31. |
2011 Jul | degradation | 7 | 0 | NA |
| PUL0583 | enzyme activity assay, gene deletion mutant and growth assay | cellobiose | Geobacillus stearothermophilus | 8407820 Cloning and sequencing of a cellobiose phosphotransferase system operon from Bacillus stearothermophilus XL-65-6 and functional expression in Escherichia coli. J Bacteriol. 1993 Oct;175(20):6441-50. doi: 10.1128/jb.175.20.6441-6450.1993. |
1993 Oct | degradation | 5 | 0 | NA |
| PUL0667 | UHPLC-MS, RNA-seq, RT-qPCR | pectin | Bacteroides thetaiotaomicron VPI-5482 | 34420703 Discrete genetic loci in human gut Bacteroides thetaiotaomicron confer pectin metabolism. Carbohydr Polym. 2021 Nov 15;272:118534. doi: 10.1016/j.carbpol.2021.118534. Epub 2021 Aug 6. |
2021 Nov 15 | degradation | 4 | 0 | NA |
| PUL0671 | gene deletion mutant and growth assay, enzyme activity assay, Western Blot, qPCR | cellulose | Cytophaga hutchinsonii ATCC 33406 | 34731049 A Type IX Secretion System Substrate Involved in Crystalline Cellulose Degradation by Affecting Crucial Cellulose Binding Proteins in Cytophaga hutchinsonii. Appl Environ Microbiol. 2022 Jan 25;88(2):e0183721. doi: 10.1128/AEM.01837-21. Epub 2021 Nov 3. |
2022 Jan 25 | degradation | 6 | 0 | NA |
| PUL0684 | proteomic analysis | beta-glucan | Levilactobacillus brevis TMW 1.2112 | 35328813 Proteomic Analysis Reveals Enzymes for beta-D-Glucan Formation and Degradation in Levilactobacillus brevis TMW 1.2112. Int J Mol Sci. 2022 Mar 21;23(6):3393. doi: 10.3390/ijms23063393. |
2022 Mar 21 | degradation | 2 | 0 | NA |
| PUL0709 | RNA-seq, growth assay | agar | Pseudoalteromonas atlantica T6c | 37265394 Constructing Marine Bacterial Metabolic Chassis for Potential Biorefinery of Red Algal Biomass and Agaropectin Wastes. ACS Synth Biol. 2023 Jun 16;12(6):1782-1793. doi: 10.1021/acssynbio.3c00063. Epub 2023 Jun 2. |
2023 Jun 16 | degradation | 29 | 0 | NA |
| PUL0710 | RNA-seq, growth assay, liquid chromatography and mass spectrometry, gene mutant, mice colonization with mutant | mucin | Akkermansia muciniphila ATCC BAA-835 | 37337046 A genetic system for Akkermansia muciniphila reveals a role for mucin foraging in gut colonization and host sterol biosynthesis gene expression. Nat Microbiol. 2023 Aug;8(8):1450-1467. doi: 10.1038/s41564-023-01407-w. Epub 2023 Jun 19. |
2023 Aug | degradation | 8 | 0 | NA |
| PUL0711 | RNA-seq, growth assay, liquid chromatography and mass spectrometry, gene mutant, mice colonization with mutant | mucin | Akkermansia muciniphila ATCC BAA-835 | 37337046 A genetic system for Akkermansia muciniphila reveals a role for mucin foraging in gut colonization and host sterol biosynthesis gene expression. Nat Microbiol. 2023 Aug;8(8):1450-1467. doi: 10.1038/s41564-023-01407-w. Epub 2023 Jun 19. |
2023 Aug | degradation | 5 | 0 | NA |
| PUL0712 | growth assay, RNA-seq, qPCR | pectic polysaccharide | Bacteroides thetaiotaomicron VPI-5482 | 37451376 A pectic polysaccharide isolated from Achyranthes bidentata is metabolized by human gut Bacteroides spp. Int J Biol Macromol. 2023 Sep 1;248:125785. doi: 10.1016/j.ijbiomac.2023.125785. Epub 2023 Jul 13. |
2023 Sep 1 | degradation | 10 | 0 | NA |
| PUL0713 | growth assay, RNA-seq, qPCR | pectic polysaccharide | Bacteroides thetaiotaomicron VPI-5482 | 37451376 A pectic polysaccharide isolated from Achyranthes bidentata is metabolized by human gut Bacteroides spp. Int J Biol Macromol. 2023 Sep 1;248:125785. doi: 10.1016/j.ijbiomac.2023.125785. Epub 2023 Jul 13. |
2023 Sep 1 | degradation | 4 | 0 | NA |
| PUL0740 | RNA-seq, ion chromatography, HPLC, growth assay | human milk oligosaccharide | Bifidobacterium longum subsp. infantis ATCC 15697 | 32985563, 31489370 Strain-specific strategies of 2'-fucosyllactose, 3-fucosyllactose, and difucosyllactose assimilation by Bifidobacterium longum subsp. infantis Bi-26 and ATCC 15697. Evolutionary adaptation in fucosyllactose uptake systems supports bifidobacteria-infant symbiosis. Sci Rep. 2020 Sep 28;10(1):15919. doi: 10.1038/s41598-020-72792-z. Sci Adv. 2019 Aug 28;5(8):eaaw7696. doi: 10.1126/sciadv.aaw7696. eCollection 2019 Aug. |
2020 Sep 28,2019 Aug | degradation | 3 | 0 | NA |
| PUL0741 | RNA-seq, ion chromatography, HPLC, growth assay | human milk oligosaccharide | Bifidobacterium longum subsp. infantis ATCC 15697 | 32985563 Strain-specific strategies of 2'-fucosyllactose, 3-fucosyllactose, and difucosyllactose assimilation by Bifidobacterium longum subsp. infantis Bi-26 and ATCC 15697. Sci Rep. 2020 Sep 28;10(1):15919. doi: 10.1038/s41598-020-72792-z. |
2020 Sep 28 | degradation | 7 | 0 | NA |
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