PULID | Characterization Method(s) | Substrate | Organism | Publication | Publish Date | Type | Num Genes | Num CAZymes | CazyFamily |
---|---|---|---|---|---|---|---|---|---|
PUL0115 | expression of recombinant proteins, RNA-seq, differential gene expression | host glycan | Bacteroides thetaiotaomicron | 31160824 Complex N-glycan breakdown by gut Bacteroides involves an extensive enzymatic apparatus encoded by multiple co-regulated genetic loci. Nat Microbiol. 2019 Sep;4(9):1571-1581. doi: 10.1038/s41564-019-0466-x. Epub 2019 Jun 3. |
2019 Sep | degradation | 7 | 7 | CBM93, GH33, CE3, CE20, GH2, GH20, GH20, CBM32 |
PUL0116 | expression of recombinant proteins, RNA-seq, differential gene expression | host glycan | Bacteroides thetaiotaomicron | 31160824 Complex N-glycan breakdown by gut Bacteroides involves an extensive enzymatic apparatus encoded by multiple co-regulated genetic loci. Nat Microbiol. 2019 Sep;4(9):1571-1581. doi: 10.1038/s41564-019-0466-x. Epub 2019 Jun 3. |
2019 Sep | degradation | 2 | 1 | GH20 |
PUL0117 | expression of recombinant proteins, RNA-seq, differential gene expression, enzyme specificity assay, enzyme activity assay | host glycan | Bacteroides thetaiotaomicron | 31160824, 23943617 Complex N-glycan breakdown by gut Bacteroides involves an extensive enzymatic apparatus encoded by multiple co-regulated genetic loci. Discovery of beta-1,4-D-mannosyl-N-acetyl-D-glucosamine phosphorylase involved in the metabolism of N-glycans. Nat Microbiol. 2019 Sep;4(9):1571-1581. doi: 10.1038/s41564-019-0466-x. Epub 2019 Jun 3. J Biol Chem. 2013 Sep 20;288(38):27366-27374. doi: 10.1074/jbc.M113.469080. Epub 2013 Aug 13. |
2019 Sep,2013 Sep 20 | degradation | 22 | 7 | GH130_2, GH163, GH18, GH20, GH92 |
PUL0120 | expression of recombinant proteins, RNA-seq, differential gene expression | host glycan | Bacteroides thetaiotaomicron | 31160824 Complex N-glycan breakdown by gut Bacteroides involves an extensive enzymatic apparatus encoded by multiple co-regulated genetic loci. Nat Microbiol. 2019 Sep;4(9):1571-1581. doi: 10.1038/s41564-019-0466-x. Epub 2019 Jun 3. |
2019 Sep | degradation | 6 | 1 | GH18 |
PUL0154 | RNA-seq, differential gene expression | human milk oligosaccharide | Lactobacillus rhamnosus | 30332787 Prebiotics for Lactose Intolerance: Variability in Galacto-Oligosaccharide Utilization by Intestinal Lactobacillus rhamnosus. Nutrients. 2018 Oct 16;10(10):1517. doi: 10.3390/nu10101517. |
2018 Oct 16 | degradation | 3 | 1 | GH1 |
PUL0156 | RNA-seq, differential gene expression | human milk oligosaccharide | Lactobacillus rhamnosus | 30332787 Prebiotics for Lactose Intolerance: Variability in Galacto-Oligosaccharide Utilization by Intestinal Lactobacillus rhamnosus. Nutrients. 2018 Oct 16;10(10):1517. doi: 10.3390/nu10101517. |
2018 Oct 16 | degradation | 2 | 1 | GH2 |
PUL0157 | RNA-seq, differential gene expression | human milk oligosaccharide | Lactobacillus rhamnosus | 30332787 Prebiotics for Lactose Intolerance: Variability in Galacto-Oligosaccharide Utilization by Intestinal Lactobacillus rhamnosus. Nutrients. 2018 Oct 16;10(10):1517. doi: 10.3390/nu10101517. |
2018 Oct 16 | degradation | 4 | 1 | GH1 |
PUL0158 | RNA-seq, differential gene expression | human milk oligosaccharide | Lactobacillus rhamnosus | 30332787 Prebiotics for Lactose Intolerance: Variability in Galacto-Oligosaccharide Utilization by Intestinal Lactobacillus rhamnosus. Nutrients. 2018 Oct 16;10(10):1517. doi: 10.3390/nu10101517. |
2018 Oct 16 | degradation | 4 | 1 | GH1 |
PUL0159 | RNA-seq, differential gene expression | human milk oligosaccharide | Lactobacillus rhamnosus | 30332787 Prebiotics for Lactose Intolerance: Variability in Galacto-Oligosaccharide Utilization by Intestinal Lactobacillus rhamnosus. Nutrients. 2018 Oct 16;10(10):1517. doi: 10.3390/nu10101517. |
2018 Oct 16 | degradation | 2 | 1 | GH2 |
PUL0164 | mass spectrometry, sequence homology analysis, differential gene expression | beta-mannan | Leeuwenhoekiella sp. MAR_2009_132 | 30246424 Alpha- and beta-mannan utilization by marine Bacteroidetes. Environ Microbiol. 2018 Nov;20(11):4127-4140. doi: 10.1111/1462-2920.14414. Epub 2018 Oct 16. |
2018 Nov | degradation | 19 | 12 | CBM8, CE2, CE20, GH130_1, GH26, GH27, GH3, GH5_2, GH5_7, GH9 |
PUL0165 | mass spectrometry, sequence homology analysis, differential gene expression | beta-mannan | Salegentibacter sp. Hel_I_6 | 30246424 Alpha- and beta-mannan utilization by marine Bacteroidetes. Environ Microbiol. 2018 Nov;20(11):4127-4140. doi: 10.1111/1462-2920.14414. Epub 2018 Oct 16. |
2018 Nov | degradation | 16 | 8 | CE20, GH130_1, GH26, GH27, GH30, GH5_2, GH9 |
PUL0467 | microarray, qPCR, expression of recombinant proteins, RNA-seq, differential gene expression | host glycan | Bacteroides thetaiotaomicron | 18996345, 31160824 Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Complex N-glycan breakdown by gut Bacteroides involves an extensive enzymatic apparatus encoded by multiple co-regulated genetic loci. Cell Host Microbe. 2008 Nov 13;4(5):447-57. doi: 10.1016/j.chom.2008.09.007. Nat Microbiol. 2019 Sep;4(9):1571-1581. doi: 10.1038/s41564-019-0466-x. Epub 2019 Jun 3. |
2008 Nov 13,2019 Sep | degradation | 14 | 4 | GH18, GH2, GH20, GH29, CBM32 |
PUL0598 | liquid chromatography and mass spectrometry, differential gene expression | xylan | Clostridium cellulovorans 743B | 26020016 Elucidation of the recognition mechanisms for hemicellulose and pectin in Clostridium cellulovorans using intracellular quantitative proteome analysis. AMB Express. 2015 May 23;5:29. doi: 10.1186/s13568-015-0115-6. eCollection 2015. |
2015 | degradation | 4 | 1 | GH95 |
PUL0599 | liquid chromatography and mass spectrometry, differential gene expression | xylan | Clostridium cellulovorans | 26020016 Elucidation of the recognition mechanisms for hemicellulose and pectin in Clostridium cellulovorans using intracellular quantitative proteome analysis. AMB Express. 2015 May 23;5:29. doi: 10.1186/s13568-015-0115-6. eCollection 2015. |
2015 | degradation | 7 | 1 | GH43_11, CBM91 |
PUL0600 | liquid chromatography and mass spectrometry, differential gene expression | galactomannan | Clostridium cellulovorans | 26020016 Elucidation of the recognition mechanisms for hemicellulose and pectin in Clostridium cellulovorans using intracellular quantitative proteome analysis. AMB Express. 2015 May 23;5:29. doi: 10.1186/s13568-015-0115-6. eCollection 2015. |
2015 | degradation | 12 | 3 | GH130_1, GH130_2, GH2 |
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